Finally! A resolved crested newt phylogeny

The main motivation to conduct the outgoing phase of my Marie Skłodowska-Curie fellowship at the University of California, Los Angeles was to design a ‘sequence capture by target enrichment’ pipeline for Triturus. At UCLA, Evan McCartney-Melstad and Brad Shaffer possess the necessary experience as they use this technique for their system of hybridizing tiger salamanders (genus Ambystoma). Adapting the pipeline to Triturus went superbly and the first paper based on this dataset has now been published in Molecular Phylogenetics and Evolution.

36 A. californiense curled poseCalifornia tiger salamander (Ambystoma californiense) by the Shaffer lab

Triturus is an example of an adaptive radiation: the more slender a species’ body build, the longer its annual aquatic period. This suggests a causal relationship between body build evolution and ecological specialization. While adaptive radiations provide some of the best examples of evolution in action (think Darwin finches and cichlid fishes), the relationships between the species involved are notoriously difficult to decipher. This problem also applies to Triturus: despite several attempts, the phylogeny was hitherto unresolved, hampering our ability to retrace the eco-morphological evolution in Triturus.

36 seqcap phylogeny.jpg
The new Triturus tree (the newt pictures are by Michael Fahrbach)

With our ‘sequence capture by target enrichment’ pipeline we can sequence about 6000 DNA markers for the genus Triturus. To try and resolve the Triturus phylogeny we obtained a dataset including representatives of all marbled and crested newt species. Three distinct tree-building methods each recovered the same Triturus tree. Now we were able to place Triturus’ eco-morphological divergence into an evolutionary context: the red arrows on the Triturus tree above show inferred additions of trunk vertebrae, resulting in more slender and aquatic bodies. Our results show that the genus gradually evolved more elongated and aquatic newts. Nice!

Reference: Wielstra, B., McCartney-Melstad, E., Arntzen, J.W., Butlin, R.K., Shaffer, H.B. (2019). Phylogenomics of the adaptive radiation of Triturus newts supports gradual ecological niche expansion towards an incrementally aquatic lifestyle. Molecular Phylogenetics and Evolution 133: 120-127.

MSCactions

This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 655487.
Advertisements

About Ben Wielstra

I am a biologist interested in the interaction among closely species, both ecologically and genetically, during the course of their evolution. In my studies I'm employing the newt genus Triturus.
This entry was posted in Uncategorized. Bookmark the permalink.

Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out /  Change )

Google+ photo

You are commenting using your Google+ account. Log Out /  Change )

Twitter picture

You are commenting using your Twitter account. Log Out /  Change )

Facebook photo

You are commenting using your Facebook account. Log Out /  Change )

Connecting to %s